TimageTK User Guide¶
This guide introduce the most important features of TimageTK and is intended as an introductory overview.
For detailed examples, see: Examples.
This is the TimageTK User Guide for TimageTK version .
The Components module contains both image data structures (
TissueImage) and functionalities
dedicated to input/output operations (
It consists in four modules, one dedicated to Input/Ouput (see Input/Output module), and three classes:
SpatialImagedata structure is dedicated to grayscale intensity images (see SpatialImage class)
LabelledImagedata structure is dedicated to segmented images (see LabelledImage class)
TissueImagedata structure is also dedicated to segmented images, but with a biology oriented terminology (see TissueImage class)
The Input/Output module contains functions used to read and write images and transformations.
imsave with images and
save_trsf with transformations.
|POSS_EXT| replace:: :io.io_image.POSS_EXT
Accepted file formats are: |POSS_EXT|.
These are low level functions, offering a lot of control on parameters, we advise non-expert users to first work with the
The Plugins module contains a set of plugins whose API (Application Programming Interface) is standardized. They implement higher level functionalities and provide an access to different methods.
The list of available plugins with their number of implemented methods is:
|9 methods, see Linear Filtering|
|12 methods, see Grayscale Morphology|
|Averaging:||5 methods, see Averaging|
|H-transform:||2 methods, see H-transform|
|1 method, see Region Labeling|
|Segmentation:||1 method, see Segmentation|
|Labels Post Processing:|
|?? methods, see Labels Post Processing|
|Registration:||3 methods, see Registration|
|3 methods, see Sequence registration|
|1 method, see Fusion|